Curated Optogenetic Publication Database

Search precisely and efficiently by using the advantage of the hand-assigned publication tags that allow you to search for papers involving a specific trait, e.g. a particular optogenetic switch or a host organism.

Showing 1 - 1 of 1 results
1.

The rate of information transmission through the MAPK/ERK signaling pathway stimulated in a pulsatile manner.

blue CRY2/CRY2 MCF10A Signaling cascade control
bioRxiv, 19 Mar 2022 DOI: 10.1101/2022.03.17.484713 Link to full text
Abstract: Many intracellular signaling pathways, including the MAPK/ERK cascade, respond to an external stimulus in a yes-or-no manner. This has been reflected in estimates of the amount of information a single cell can transmit about the amplitude of an applied (and sustained) input signal, which turns out to only slightly exceed 1 bit. More information, however, can potentially be transmitted in response to time-varying stimulation. In this work, we find a lower bound of the MAPK/ERK signaling channel capacity. We use an epithelial cell line expressing an ERK activity reporter and an optogenetically modified fibroblast growth factor receptor, which allows triggering eventual ERK activity by short light pulses. We observe that it is possible to reconstruct the stimulatory input pattern with five-minute delay and one-minute resolution. By stimulating the cells with random pulse trains we demonstrate that the information transmission rate through the MAPK/ERK pathway can exceed 6 bits per hour. Such high information transmission rate allows the MAPK/ERK pathway to coordinate multiple processes including cell movement.
Submit a new publication to our database